Related Works

Publications:

2013

Determining the C-Terminal Amino Acid of a Peptide from MS/MS Data. J. Allmer. Journal of Integrated Omics (2013) 

Non-Direct Sequence Ions in the Tandem Mass Spectrometry of Protonated Peptide Amides—an Energy-Resolved Study. A.G. Harrison, C. Tasoglu, T. Yalcin. Journal of the American Society for Mass Spectrometry (2013) 24: 1565-1572

Protonated Dipeptide Losses from b5 and b4 Ions of Side Chain Hydroxyl Group Containing Pentapeptides. A.E. Atik, T. Yalcin. Journal of the American Society for Mass Spectrometry(2013)

A BODIPY aldoxime-based chemodosimeter for highly selective and rapid detection of hypochlorous acid. M. Emrullahoğlu, M. Üçüncü, E. Karakuş. Chem. Commun. (2013) 49:7836

A rhodamine based “turn-on” chemodosimeter for monitoring gold ions in synthetic samples and living cells. M. Emrullahoğlu, E. Karakuş, M. Üçüncü. Analyst (2013) 138: 3638

2012

Investigation of peptide size, residue position, neighbor amino acid and side chain effect on macrocyclization of bn (n = 5–7) ionsC. Tasoglu, G. Gorgulu, T. Yalcin. International Journal of Mass Spectrometry (2012) 316– 318:108– 116

The role of lysine є-amine group on the macrocyclization of b ionsA. E. Atik, G. Gorgulu, T. YalcinInternational Journal of Mass Spectrometry (2012) 316– 318:84– 90

Radiolabeling of methanol extracts of yarrow (Achillea millefolium l) in rats. B. Cekic, A. Y. Kilcar, F. Z. B. Muftuler, P. Unak, E. I. Medine Acta Cirúrgica Brasileira (2012) 27(5):294-300.

2011

A Systematic Study of Acidic Peptides for b-Type Sequence ScramblingA. E. Atik, T. YalcinJournal of the American Society for Mass Spectrometry (2011) 22:38-48

Identification of Respiratory Chain Gene Mutations that Shorten Replicative Life Span in Yeast. E. Hacioglu, A. B. Demir, A. Koc. Experimental Gerontology (2012) 47: 149 – 153

Roles of ATR1 Paralogs YMR279c and YOR378w in Boron Stress Tolerance. G. O. Bozdag, I. Uluisik, G. S. Gulculer, H. C. Karakaya, A. Koc. Biochemical and Biophysical Research Communications (2011) 409: 748 – 751 

Effect of side chain substituents on the electron injection abilities of unsymmetrical perylene diimide dyesH. Dinçalp, Z. Aşkar, C. Zafer, S. Içli. Dyes and Pigments (2011) 91:182-191.

Genome-wide identification of genes that play a role in boron stress response in yeast
I. Uluisik, A. Kaya, E. S. Unlu, K. Avsar, H. C. Karakaya, T. Yalcin, A. Koc. Genomics (2011) 97:106–111

Pyridine containing chiral macrocycles: synthesis and their enantiomeric recognition for amino acid derivativesP. Deniz, Y. Turgut, M. Togrul, H. HosgorenTetrahedron (2011) 67:6227-6232

2010

Biotransformation of Cycloastragenol by Cunninghamella blakesleeana NRRL 1369 Resulting in a Novel FrameworkM. Kuban, G. Ögen, and E. BedirOrganic Letters (2010) 12(19): 4252-4255.

Selective Manipulation of ICT and PET Processes in Styryl-Bodipy Derivatives: Applications in Molecular Logic and Fluorescence Sensing of Metal Ions O. A. Bozdemir, R. Guliyev, O. Buyukcakir, S. Selcuk, S. Kolemen, G. Gulseren, T. Nalbantoglu, H. Boyaci, and E. U. AkkayaJ. Am. Chem. Soc. (2010) 132(23):8029-8036.

The roles of thiol oxidoreductases in yeast replicative agingE. Hacioglu, I. Esmer, D. E. Fomenko, V. N. Gladyshev, A. KocMechanisms of Ageing and Development  (2010) 131:692–699

 

Ph.D. Thesis:

Method Development of Proteomic Studies and Its Application to Biological Samples using Mass Spectrometry by M. Z. Güray  (2010 – …) İYTE

Gas-Phase Fragmentation Mechanisms of Protonated Peptides via Tandem Mass Spectrometry by Ç. Taşoğlu  (2008 – 2013) İYTE

Studies of Gas-Phase Fragmentation Mechanisms of Peptide b Ions by Mass Spectrometry by A. E. Atik (2008 – 2013) İYTE

 

M.Sc. Thesis:

Investigation of Gas Phase Fragmentation Reaction Mechanisms of Doubly-Protonated bn (n=7-9) Ions by Ion Trap Mass Spectrometry by Ö. Görgün 2014 İYTE

Method Development for Proteomic Studies using Gel Electrophoresis and Mass Spectrometry by M. Dinç  2012 İYTE

RAY: A Profile-based Approach for Homology Matching of Tandem-MS Spectra to Sequence Databases by Ş. Yılmaz 2012 İYTE

Changes in protein profiles in bortezomib applied multiple myeloma cells by T. Turan 2012 İYTE

Proteomic Analysis of Boron Stress Response in Yeast Saccharomyces cerevisiae by K. Avşar 2011 İYTE

Genetic Mapping and Characterization of Eggplant for Glycoalkaloid Content by N. Gürbüz 2010 İYTE

Proteomic Basis of Drought Tolerance in Chickpea by H. Şelale 2010 İYTE