Publications:
2013
Determining the C-Terminal Amino Acid of a Peptide from MS/MS Data. J. Allmer. Journal of Integrated Omics (2013)
Non-Direct Sequence Ions in the Tandem Mass Spectrometry of Protonated Peptide Amides—an Energy-Resolved Study. A.G. Harrison, C. Tasoglu, T. Yalcin. Journal of the American Society for Mass Spectrometry (2013) 24: 1565-1572
Protonated Dipeptide Losses from b5 and b4 Ions of Side Chain Hydroxyl Group Containing Pentapeptides. A.E. Atik, T. Yalcin. Journal of the American Society for Mass Spectrometry(2013)
A BODIPY aldoxime-based chemodosimeter for highly selective and rapid detection of hypochlorous acid. M. Emrullahoğlu, M. Üçüncü, E. Karakuş. Chem. Commun. (2013) 49:7836
A rhodamine based “turn-on” chemodosimeter for monitoring gold ions in synthetic samples and living cells. M. Emrullahoğlu, E. Karakuş, M. Üçüncü. Analyst (2013) 138: 3638
2012
Investigation of peptide size, residue position, neighbor amino acid and side chain effect on macrocyclization of bn (n = 5–7) ions. C. Tasoglu, G. Gorgulu, T. Yalcin. International Journal of Mass Spectrometry (2012) 316– 318:108– 116
The role of lysine є-amine group on the macrocyclization of b ions. A. E. Atik, G. Gorgulu, T. Yalcin. International Journal of Mass Spectrometry (2012) 316– 318:84– 90
Radiolabeling of methanol extracts of yarrow (Achillea millefolium l) in rats. B. Cekic, A. Y. Kilcar, F. Z. B. Muftuler, P. Unak, E. I. Medine Acta Cirúrgica Brasileira (2012) 27(5):294-300.
2011
A Systematic Study of Acidic Peptides for b-Type Sequence Scrambling. A. E. Atik, T. Yalcin. Journal of the American Society for Mass Spectrometry (2011) 22:38-48
Identification of Respiratory Chain Gene Mutations that Shorten Replicative Life Span in Yeast. E. Hacioglu, A. B. Demir, A. Koc. Experimental Gerontology (2012) 47: 149 – 153
Roles of ATR1 Paralogs YMR279c and YOR378w in Boron Stress Tolerance. G. O. Bozdag, I. Uluisik, G. S. Gulculer, H. C. Karakaya, A. Koc. Biochemical and Biophysical Research Communications (2011) 409: 748 – 751
Effect of side chain substituents on the electron injection abilities of unsymmetrical perylene diimide dyes. H. Dinçalp, Z. Aşkar, C. Zafer, S. Içli. Dyes and Pigments (2011) 91:182-191.
Genome-wide identification of genes that play a role in boron stress response in yeast
I. Uluisik, A. Kaya, E. S. Unlu, K. Avsar, H. C. Karakaya, T. Yalcin, A. Koc. Genomics (2011) 97:106–111
Pyridine containing chiral macrocycles: synthesis and their enantiomeric recognition for amino acid derivatives. P. Deniz, Y. Turgut, M. Togrul, H. Hosgoren. Tetrahedron (2011) 67:6227-6232
2010
Biotransformation of Cycloastragenol by Cunninghamella blakesleeana NRRL 1369 Resulting in a Novel Framework. M. Kuban, G. Ögen, and E. Bedir. Organic Letters (2010) 12(19): 4252-4255.
Selective Manipulation of ICT and PET Processes in Styryl-Bodipy Derivatives: Applications in Molecular Logic and Fluorescence Sensing of Metal Ions O. A. Bozdemir, R. Guliyev, O. Buyukcakir, S. Selcuk, S. Kolemen, G. Gulseren, T. Nalbantoglu, H. Boyaci, and E. U. Akkaya. J. Am. Chem. Soc. (2010) 132(23):8029-8036.
The roles of thiol oxidoreductases in yeast replicative aging. E. Hacioglu, I. Esmer, D. E. Fomenko, V. N. Gladyshev, A. Koc. Mechanisms of Ageing and Development (2010) 131:692–699
Ph.D. Thesis:
Proteomic Analyses of Biological Samples by Using Different Mass Spectrometric Strategies by M. Dinç (2012-2018) İYTE
Proteomic Studies and Its Application to Biological Samples using Mass Spectrometry by M. Z. Güray (2010 – 2018) İYTE
Gas-Phase Fragmentation Mechanisms of Protonated Peptides via Tandem Mass Spectrometry by Ç. Taşoğlu (2008 – 2013) İYTE
Studies of Gas-Phase Fragmentation Mechanisms of Peptide b Ions by Mass Spectrometry by A. E. Atik (2008 – 2013) İYTE
M.Sc. Thesis:
Studies of Gas Phase Fragmentation of a and a* ions by Mass Spectrometry, D. Kızılkoca (2017-…) İYTE
Investigation of protein profiles of Listeria monocytogenes in the existence of Phenolic Acids using Mass Spectrometry by S. Şen (2017-…) İYTE
Mass Spectrometry-based Comparative Proteomic Analysis of Drug Resistant and Nonresistant Strains of Parasite Trichomonas vaginalis by B. Özyağcı (2016-…) İYTE
Mass Pectrometry-based Proteome Analysis of Leishmania major Parasite in Two Clinical Isolates which Exhibit Different Impact on Virulence by N. Güvenç (2016-…) İYTE
Investigation of Gas Phase Fragmentation Reaction Mechanisms of Doubly-Protonated bn (n=7-9) Ions by Ion Trap Mass Spectrometry by Ö. Görgün 2014 İYTE
Method Development for Proteomic Studies using Gel Electrophoresis and Mass Spectrometry by M. Dinç 2012 İYTE
RAY: A Profile-based Approach for Homology Matching of Tandem-MS Spectra to Sequence Databases by Ş. Yılmaz 2012 İYTE
Changes in protein profiles in bortezomib applied multiple myeloma cells by T. Turan 2012 İYTE
Proteomic Analysis of Boron Stress Response in Yeast Saccharomyces cerevisiae by K. Avşar 2011 İYTE
Genetic Mapping and Characterization of Eggplant for Glycoalkaloid Content by N. Gürbüz 2010 İYTE
Proteomic Basis of Drought Tolerance in Chickpea by H. Şelale 2010 İYTE